proteopy

This section provides complete API documentation for ProteoPy. The library is organized into the following modules:

Module

Description

.read

Data import from DIA-NN, MaxQuant, and tabular formats

.pp

Preprocessing: filtering, normalization, imputation

.tl

Tools: differential analysis, proteoform inference, clustering

.pl

Plotting: QC visualizations, volcano plots, heatmaps

.get

Data retrieval: extract results as DataFrames

.ann

Annotation: add metadata to samples and variables

.datasets

Built-in example datasets

.download

Download external resources (contaminant databases)

.utils

Utility functions for data validation

Attention

The utils module is under active development. Its API may change without notice and we do not guarantee backwards compatibility.