.read

The proteopy.read module provides functions to import quantitative proteomics data from various analysis pipelines into AnnData objects.

Supported formats:

  • DIA-NN: Native report format

  • Long format: Generic tabular format with sample, feature, and intensity columns

Functions

proteopy.read.diann

dia-NN input reader

proteopy.read.long

Read long-format peptide or protein files into an AnnData container.